PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Lus10022264
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Linaceae; Linum
Family LBD
Protein Properties Length: 193aa    MW: 20788 Da    PI: 8.1281
Description LBD family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Lus10022264genomeBGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1DUF260139.21.4e-4319117199
       DUF260   1 aCaaCkvlrrkCakdCvlapyfpaeqpkkfanvhklFGasnvlkllkalpeeeredamsslvyeAearardPvyGavgvilklqqqleqlkaelallk 98 
                  +CaaCk+lrrkC +dC++apyfp e+p+kfanvhk+FGasnv+kll+++ +++reda++sl+yeAear++dPvyG+vg i+ lq+q+ +l++el++++
  Lus10022264  19 PCAACKFLRRKCLPDCIFAPYFPPEEPHKFANVHKIFGASNVSKLLHEVLPHQREDAVNSLAYEAEARLKDPVYGCVGAISVLQRQVIRLQKELDATN 116
                  7*********************************************************************************************9987 PP

       DUF260  99 e 99 
                  +
  Lus10022264 117 A 117
                  6 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5089127.54118119IPR004883Lateral organ boundaries, LOB
PfamPF031955.3E-4319116IPR004883Lateral organ boundaries, LOB
Sequence ? help Back to Top
Protein Sequence    Length: 193 aa     Download sequence    Send to blast
MAANSSASSS TTSNYTNSPC AACKFLRRKC LPDCIFAPYF PPEEPHKFAN VHKIFGASNV  60
SKLLHEVLPH QREDAVNSLA YEAEARLKDP VYGCVGAISV LQRQVIRLQK ELDATNADLI  120
RYAYTNTTAT TTNDINIPPI GRSSSSSSSA AASSRMNNMY DHHQGYYGNY SSWNNNNCGG  180
DGHGRGNGGG GF*
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankHQ8841270.0HQ884127.1 Linum usitatissimum clone Contig1437 microsatellite sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_012072821.17e-80PREDICTED: LOB domain-containing protein 25
SwissprotQ9FML48e-74LOB_ARATH; Protein LATERAL ORGAN BOUNDARIES
TrEMBLA0A067LNI67e-80A0A067LNI6_JATCU; Uncharacterized protein
STRINGPOPTR_0001s35280.11e-78(Populus trichocarpa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF109134112
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G27650.14e-66LOB domain-containing protein 25